CTR Bioinformatics
The CTR offers a bioinformatics facility for members
To request work be undertaken by the bioinformatics team, please download the form below and send to the CTR Administrator
YOU CAN DOWNLOAD THE PROJECT REQUEST FORM HERE
Examples of the type bioinformatics support provided:
Experimental Design
- Replicates (biological vs technical)
- Sequencing choices (read length, depth etc)
RNA-Seq
- Differential gene expression
- Isoform expression
- Single cell sequencing (e.g. DROP-Seq)
Whole genome / Targetted sequencing
- Variant calling
Methylation Sequencing
- Whole genome / targetted sequencing
- Bisulfite (mC+hmC), oxidative bisulfite (mC), (h)MeDIP
- DMR calling
- Illumina 450K & EPIC array data analysis
RNA structure / RNA Interactions
- Prediction (2D and 3D)
- RNA motif discovery and searching
- RNA structure homology searching
Protein alignments / structure / interactions
- Multiple sequence alignments
- Homology modeling
- SILAC analysis
Microscopy Image Analysis
- Particle tracking
Training/Teaching
- Bespoke training (e.g. NGS Analysis, Introduction to Linux)